| 6. Round | 25/08/2012 | Preußen Münster | - | 1. FC Heidenheim 1846 | 1:1 |  |
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| 7. Round | 28/08/2012 | 1. FC Heidenheim 1846 | - | Chemnitzer FC | 3:2 | ||||
| 8. Round | 02/09/2012 | SV Darmstadt 98 | - | 1. FC Heidenheim 1846 | 0:2 | ||||
| 9. Round | 16/09/2012 | 1. FC Heidenheim 1846 | - | Hansa Rostock | 1:2 | ||||
| 10. Round | 21/09/2012 | SV Wehen Wiesbaden | - | 1. FC Heidenheim 1846 | 1:1 | ||||
| 11. Round | 26/09/2012 | Wacker Burghausen | - | 1. FC Heidenheim 1846 | 4:1 | ||||
| 12. Round | 29/09/2012 | 1. FC Heidenheim 1846 | - | Hallescher FC | 3:1 | ||||
| 13. Round | 06/10/2012 | VfB Stuttgart II | - | 1. FC Heidenheim 1846 | 0:2 |  |
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| 14. Round | 20/10/2012 | 1. FC Heidenheim 1846 | - | VfL Osnabrück | 1:3 |
Germany