| 16. Round | 21/10/2006 | Würzburger FV | - | Wacker Burghausen II | 3:2 |  |
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| 18. Round | 04/11/2006 | Würzburger FV | - | SpVgg Unterhaching II | 0:0 | ||||
| 21. Round | 25/11/2006 | Würzburger FV | - | 1. FC Bad Kötzting | 1:2 | ||||
| 25. Round | 03/03/2007 | Würzburger FV | - | 1. SC Feucht | 5:2 | ||||
| 33. Round | 29/04/2007 | SC Fürstenfeldbruck | - | Würzburger FV | 2:2 | ||||
| 34. Round | 04/05/2007 | Würzburger FV | - | Jahn Regensburg | 1:3 | ||||
| 35. Round | 12/05/2007 | Wacker Burghausen II | - | Würzburger FV | 0:2 | ||||
| 36. Round | 19/05/2007 | Würzburger FV | - | SpVgg Bayern Hof | 1:0 | ||||
| 37. Round | 26/05/2007 | SpVgg Unterhaching II | - | Würzburger FV | 1:2 |
Germany