| 2. Round | 18/08/2006 | TSV 1860 München | - | Kickers Offenbach | 3:0 | ||||
| 3. Round | 28/08/2006 | Wacker Burghausen | - | TSV 1860 München | 0:2 | ||||
| 5. Round | 24/09/2006 | MSV Duisburg | - | TSV 1860 München | 0:0 | ||||
| 6. Round | 01/10/2006 | TSV 1860 München | - | FC Carl Zeiss Jena | 2:0 | ||||
| 7. Round | 13/10/2006 | Eintracht Braunschweig | - | TSV 1860 München | 2:0 | ||||
| 8. Round | 22/10/2006 | TSV 1860 München | - | 1. FC Kaiserslautern | 0:1 |  |
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| 9. Round | 27/10/2006 | FC Augsburg | - | TSV 1860 München | 3:0 | ||||
| 10. Round | 03/11/2006 | TSV 1860 München | - | Rot-Weiss Essen | 2:0 | ||||
| 11. Round | 07/11/2006 | Karlsruher SC | - | TSV 1860 München | 4:1 | ||||
| 12. Round | 10/11/2006 | TSV 1860 München | - | SC Paderborn 07 | 1:0 | ||||
| 17. Round | 18/12/2006 | TSV 1860 München | - | Erzgebirge Aue | 4:0 | ||||
| 18. Round | 21/01/2007 | TSV 1860 München | - | SpVgg Greuther Fürth | 0:3 | ||||
| 19. Round | 28/01/2007 | Kickers Offenbach | - | TSV 1860 München | 2:1 | ||||
| 24. Round | 04/03/2007 | TSV 1860 München | - | Eintracht Braunschweig | 2:0 | |
Germany