| 4. Round | 02/08/2016 | SpVgg Unterhaching | - | SpVgg Greuther Fürth II | 2:0 | ||||
| 7. Round | 21/08/2016 | SpVgg Greuther Fürth II | - | TSV 1860 München II | 1:2 | ||||
| 9. Round | 03/09/2016 | SpVgg Greuther Fürth II | - | VfR Garching | 4:2 |  |
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| 10. Round | 09/09/2016 | FC Memmingen | - | SpVgg Greuther Fürth II | 1:1 | |
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| 14. Round | 08/10/2016 | SpVgg Greuther Fürth II | - | SV Schalding-Heining | 2:1 | ||||
| 15. Round | 15/10/2016 | 1. FC Schweinfurt 05 | - | SpVgg Greuther Fürth II | 2:0 | ||||
| 17. Round | 29/10/2016 | FV Illertissen | - | SpVgg Greuther Fürth II | 2:1 | ||||
| 18. Round | 05/11/2016 | SV Seligenporten | - | SpVgg Greuther Fürth II | 3:1 | ||||
| 19. Round | 12/11/2016 | SpVgg Greuther Fürth II | - | Wacker Burghausen | 1:0 | ||||
| 21. Round | 27/11/2016 | FC Ingolstadt 04 II | - | SpVgg Greuther Fürth II | 2:0 | ||||
| 22. Round | 06/03/2017 | SpVgg Greuther Fürth II | - | SpVgg Bayreuth | 1:1 | ||||
| 25. Round | 25/03/2017 | SpVgg Greuther Fürth II | - | TSV 1860 Rosenheim | 2:2 | ||||
| 27. Round | 09/04/2017 | SpVgg Greuther Fürth II | - | SpVgg Bayern Hof | 4:3 | ||||
| 30. Round | 21/04/2017 | TSV Buchbach | - | SpVgg Greuther Fürth II | 1:1 |
Germany