| 2. Round | 13/08/2016 | VfB Stuttgart II | - | Wormatia Worms | 1:1 | ||||
| 4. Round | 21/08/2016 | VfB Stuttgart II | - | 1. FC Saarbrücken | 3:2 |  |
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| 5. Round | 27/08/2016 | FK Pirmasens | - | VfB Stuttgart II | 1:0 | ||||
| 6. Round | 31/08/2016 | VfB Stuttgart II | - | SC Teutonia Watzenborn-Steinburg | 1:1 | ||||
| 7. Round | 05/09/2016 | FC Nöttingen | - | VfB Stuttgart II | 2:2 |  |
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| 25. Round | 18/02/2017 | SC Teutonia Watzenborn-Steinburg | - | VfB Stuttgart II | 0:1 | ||||
| 26. Round | 24/02/2017 | VfB Stuttgart II | - | FC Nöttingen | 2:0 | ||||
| 28. Round | 11/03/2017 | VfB Stuttgart II | - | Eintracht Trier | 3:2 | |
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| 29. Round | 18/03/2017 | Stuttgarter Kickers | - | VfB Stuttgart II | 3:1 | ||||
| 30. Round | 25/03/2017 | VfB Stuttgart II | - | Waldhof Mannheim | 0:1 | ||||
| 31. Round | 31/03/2017 | SV 07 Elversberg | - | VfB Stuttgart II | 3:1 | ||||
| 33. Round | 13/04/2017 | FC 08 Homburg | - | VfB Stuttgart II | 1:2 | |
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| 34. Round | 22/04/2017 | VfB Stuttgart II | - | TSV Steinbach | 2:1 | |
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| 35. Round | 29/04/2017 | Hessen Kassel | - | VfB Stuttgart II | 0:4 | |
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| 36. Round | 07/05/2017 | VfB Stuttgart II | - | SSV Ulm 1846 | 0:0 | |
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| 37. Round | 13/05/2017 | TuS Koblenz | - | VfB Stuttgart II | 2:5 | |
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