| 13. Round | 29/10/2006 | Bayern München II | - | VfB Stuttgart II | 4:1 | ||||
| 16. Round | 12/11/2006 | VfB Stuttgart II | - | SC Pfullendorf | 2:1 | ||||
| 17. Round | 17/11/2006 | 1. FC Saarbrücken | - | VfB Stuttgart II | 3:2 |  |
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| 18. Round | 24/11/2006 | Sportfreunde Siegen | - | VfB Stuttgart II | 1:2 | ||||
| 19. Round | 02/12/2006 | VfB Stuttgart II | - | SSV Reutlingen | 0:1 | |
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| 20. Round | 09/12/2006 | FK Pirmasens | - | VfB Stuttgart II | 0:1 | ||||
| 24. Round | 17/03/2007 | Hessen Kassel | - | VfB Stuttgart II | 1:3 | ||||
| 26. Round | 07/04/2007 | SV 07 Elversberg | - | VfB Stuttgart II | 2:0 | ||||
| 27. Round | 15/04/2007 | VfB Stuttgart II | - | VfR Aalen | 0:3 | |
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| 28. Round | 21/04/2007 | Karlsruher SC II | - | VfB Stuttgart II | 1:1 | |
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| 30. Round | 06/05/2007 | VfB Stuttgart II | - | Bayern München II | 4:0 | ||||
| 31. Round | 12/05/2007 | FC Ingolstadt 04 | - | VfB Stuttgart II | 2:2 | ||||
| 32. Round | 20/05/2007 | VfB Stuttgart II | - | SV Darmstadt 98 | 1:2 | ||||
| 33. Round | 26/05/2007 | SC Pfullendorf | - | VfB Stuttgart II | 1:0 | ||||
| 34. Round | 02/06/2007 | VfB Stuttgart II | - | 1. FC Saarbrücken | 2:0 |
Germany