| 3. Round | 28/08/2016 | 1. FC Mönchengladbach [Youth B] | - | 1. FC Köln [Youth B] | 0:4 | ||||
| 6. Round | 24/09/2016 | Bayer Leverkusen [Youth B] | - | 1. FC Köln [Youth B] | 1:1 | ||||
| 7. Round | 09/10/2016 | 1. FC Köln [Youth B] | - | Arminia Bielefeld [Youth B] | 7:1 | ||||
| 8. Round | 15/10/2016 | MSV Duisburg [Youth B] | - | 1. FC Köln [Youth B] | 0:0 | ||||
| 10. Round | 30/10/2016 | Fortuna Düsseldorf [Youth B] | - | 1. FC Köln [Youth B] | 1:1 | ||||
| 12. Round | 12/11/2016 | 1. FC Köln [Youth B] | - | VfL Bochum [Youth B] | 2:1 | ||||
| 14. Round | 03/12/2016 | FC Hennef 05 [Youth B] | - | 1. FC Köln [Youth B] | 1:7 |
Germany