| 1. Round | 17/08/2008 | Rot Weiss Ahlen | - | FSV Frankfurt | 2:1 | ||||
| 2. Round | 22/08/2008 | FSV Frankfurt | - | TuS Koblenz | 0:0 |  |
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| 3. Round | 31/08/2008 | FSV Frankfurt | - | SpVgg Greuther Fürth | 1:1 | ||||
| 5. Round | 21/09/2008 | FSV Frankfurt | - | Rot-Weiß Oberhausen | 3:1 | ||||
| 6. Round | 28/09/2008 | 1. FC Kaiserslautern | - | FSV Frankfurt | 2:1 | ||||
| 7. Round | 03/10/2008 | FSV Frankfurt | - | TSV 1860 München | 0:3 | ||||
| 8. Round | 19/10/2008 | SV Wehen Wiesbaden | - | FSV Frankfurt | 3:1 | ||||
| 12. Round | 07/11/2008 | 1. FC Nürnberg | - | FSV Frankfurt | 0:0 | ||||
| 15. Round | 01/12/2008 | FSV Frankfurt | - | 1. FSV Mainz 05 | 1:4 | |
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| 16. Round | 05/12/2008 | FC Ingolstadt 04 | - | FSV Frankfurt | 1:1 | ||||
| 17. Round | 12/12/2008 | FSV Frankfurt | - | FC St. Pauli | 1:0 | |
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| 18. Round | 01/02/2009 | FSV Frankfurt | - | Rot Weiss Ahlen | 4:0 |  |
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| 19. Round | 06/02/2009 | TuS Koblenz | - | FSV Frankfurt | 1:3 | ||||
| 20. Round | 13/02/2009 | SpVgg Greuther Fürth | - | FSV Frankfurt | 0:0 | ||||
| 21. Round | 22/02/2009 | FSV Frankfurt | - | VfL Osnabrück | 1:0 | ||||
| 34. Round | 24/05/2009 | FC St. Pauli | - | FSV Frankfurt | 2:0 |
France