| 6. Round | 07/08/2016 | TSV Schwabmünchen | - | Jahn Regensburg II | 2:0 | ||||
| 9. Round | 28/08/2016 | Jahn Regensburg II | - | DJK Vilzing | 4:0 | ||||
| 15. Round | 09/10/2016 | Jahn Regensburg II | - | FC Unterföhring | 1:3 | ||||
| 22. Round | 26/11/2016 | SpVgg Hankofen-Hailing | - | Jahn Regensburg II | 2:1 | ||||
| 24. Round | 11/03/2017 | FC Ismaning | - | Jahn Regensburg II | 1:3 | ||||
| 26. Round | 25/03/2017 | DJK Vilzing | - | Jahn Regensburg II | 1:0 | ||||
| 27. Round | 02/04/2017 | Jahn Regensburg II | - | 1. FC Sonthofen | 0:2 | ||||
| 28. Round | 08/04/2017 | SV Heimstetten | - | Jahn Regensburg II | 0:0 | ||||
| 30. Round | 22/04/2017 | TSV Landsberg | - | Jahn Regensburg II | 2:1 | ||||
| 32. Round | 06/05/2017 | FC Unterföhring | - | Jahn Regensburg II | 2:0 |  |
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| 33. Round | 13/05/2017 | Jahn Regensburg II | - | SV Pullach | 0:1 | ||||
| 34. Round | 20/05/2017 | TSV 1865 Dachau | - | Jahn Regensburg II | 1:0 |
Hungary