| 6. Round | 18/09/2016 | Bayer Leverkusen [Youth] | - | MSV Duisburg [Youth] | 4:0 |  |
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| 7. Round | 24/09/2016 | Fortuna Düsseldorf [Youth] | - | Bayer Leverkusen [Youth] | 0:3 | ||||
| 8. Round | 15/10/2016 | Bayer Leverkusen [Youth] | - | Preußen Münster [Youth] | 4:0 | ||||
| 10. Round | 29/10/2016 | Bayer Leverkusen [Youth] | - | Borussia Dortmund [Youth] | 2:4 | ||||
| 11. Round | 06/11/2016 | Arminia Bielefeld [Youth] | - | Bayer Leverkusen [Youth] | 0:0 | ||||
| 15. Round | 11/12/2016 | Bayer Leverkusen [Youth] | - | Rot-Weiss Essen [Youth] | 2:2 | ||||
| 16. Round | 05/02/2017 | Bayer Leverkusen [Youth] | - | VfL Bochum [Youth] | 2:1 | ||||
| 18. Round | 18/02/2017 | Bayer Leverkusen [Youth] | - | Rot-Weiß Oberhausen [Youth] | 3:0 | ||||
| 19. Round | 25/02/2017 | MSV Duisburg [Youth] | - | Bayer Leverkusen [Youth] | 1:2 | ||||
| 20. Round | 04/03/2017 | Bayer Leverkusen [Youth] | - | Fortuna Düsseldorf [Youth] | 5:1 | ||||
| 21. Round | 11/03/2017 | Preußen Münster [Youth] | - | Bayer Leverkusen [Youth] | 0:7 | |
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| 22. Round | 02/04/2017 | Bayer Leverkusen [Youth] | - | Bor. Mönchengladbach [Youth] | 3:1 | ||||
| 26. Round | 06/05/2017 | Bayer Leverkusen [Youth] | - | Viktoria Köln [Youth] | 4:2 |
Germany