| 2. Round | 20/07/2016 | 1. FC Sand | - | Würzburger Kickers II | 2:0 dec. |  |
|||
| 3. Round | 23/07/2016 | Würzburger Kickers II | - | TSV Großbardorf | 1:2 | ||||
| 4. Round | 29/07/2016 | ASV Neumarkt | - | Würzburger Kickers II | 4:0 | ||||
| 5. Round | 03/08/2016 | Würzburger Kickers II | - | Alemannia Haibach | 4:0 | ||||
| 6. Round | 06/08/2016 | VfB Eichstätt | - | Würzburger Kickers II | 3:1 | |
 |
||
| 7. Round | 13/08/2016 | Würzburger Kickers II | - | 1. SC Feucht | 0:0 | ||||
| 20. Round | 12/11/2016 | TSV Großbardorf | - | Würzburger Kickers II | 2:0 | ||||
| 22. Round | 27/11/2016 | Alemannia Haibach | - | Würzburger Kickers II | 1:1 |
Germany