| 11. Round | 01/11/2008 | Hansa Rostock II | - | SV Babelsberg 03 | 1:1 | ||||
| 13. Round | 16/11/2008 | Hamburger SV II | - | SV Babelsberg 03 | 0:0 | ||||
| 14. Round | 21/11/2008 | SV Babelsberg 03 | - | Hertha BSC II | 3:1 |  |
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| 15. Round | 28/11/2008 | VfL Wolfsburg II | - | SV Babelsberg 03 | 0:2 | ||||
| 16. Round | 07/12/2008 | SV Babelsberg 03 | - | VFC Plauen | 0:0 | ||||
| 17. Round | 14/12/2008 | Sachsen Leipzig | - | SV Babelsberg 03 | 0:0 | ||||
| 18. Round | 20/12/2008 | VfB Lübeck | - | SV Babelsberg 03 | 1:1 | ||||
| 30. Round | 13/05/2009 | SV Babelsberg 03 | - | Hamburger SV II | 6:1 |
Germany