| 14. Round | 03/12/2016 | FC Hennef 05 [Youth B] | - | 1. FC Köln [Youth B] | 1:7 |  |
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| 15. Round | 11/12/2016 | 1. FC Köln [Youth B] | - | Rot-Weiss Essen [Youth B] | 2:1 | ||||
| 16. Round | 18/12/2016 | 1. FC Köln [Youth B] | - | 1. FC Mönchengladbach [Youth B] | 2:0 | ||||
| 19. Round | 05/03/2017 | 1. FC Köln [Youth B] | - | Bayer Leverkusen [Youth B] | 1:1 |  |
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| 20. Round | 12/03/2017 | Arminia Bielefeld [Youth B] | - | 1. FC Köln [Youth B] | 1:1 | ||||
| 21. Round | 18/03/2017 | 1. FC Köln [Youth B] | - | MSV Duisburg [Youth B] | 0:4 | ||||
| 23. Round | 09/04/2017 | 1. FC Köln [Youth B] | - | Fortuna Düsseldorf [Youth B] | 3:2 | ||||
| 24. Round | 15/04/2017 | Viktoria Köln [Youth B] | - | 1. FC Köln [Youth B] | 3:3 | ||||
| 25. Round | 21/05/2017 | VfL Bochum [Youth B] | - | 1. FC Köln [Youth B] | 2:2 | ||||
| 26. Round | 28/05/2017 | 1. FC Köln [Youth B] | - | Hombrucher SV [Youth B] | 3:1 |
Cameroon