| 1. Round | 13/08/2016 | Holstein Kiel [Youth B] | - | Dynamo Dresden [Youth B] | 4:5 | ||||
| 2. Round | 20/08/2016 | Eintracht Braunschweig [Youth B] | - | Holstein Kiel [Youth B] | 1:1 |  |
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| 3. Round | 28/08/2016 | Holstein Kiel [Youth B] | - | FC St. Pauli [Youth B] | 2:2 | |
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| 5. Round | 17/09/2016 | Holstein Kiel [Youth B] | - | Niendorfer TSV [Youth B] | 4:1 | ||||
| 9. Round | 02/10/2016 | Holstein Kiel [Youth B] | - | 1. FC Union Berlin [Youth B] | 4:0 | ||||
| 7. Round | 09/10/2016 | Holstein Kiel [Youth B] | - | VfL Wolfsburg [Youth B] | 2:0 | ||||
| 10. Round | 29/10/2016 | Werder Bremen [Youth B] | - | Holstein Kiel [Youth B] | 6:1 | ||||
| 12. Round | 12/11/2016 | Holstein Kiel [Youth B] | - | RB Leipzig [Youth B] | 1:2 | ||||
| 14. Round | 04/12/2016 | Dynamo Dresden [Youth B] | - | Holstein Kiel [Youth B] | 1:0 | ||||
| 17. Round | 18/02/2017 | Holstein Kiel [Youth B] | - | TeBe Berlin [Youth B] | 3:0 | ||||
| 18. Round | 25/02/2017 | Niendorfer TSV [Youth B] | - | Holstein Kiel [Youth B] | 0:3 |
Germany