| 1. Round | 30/07/1999 | Borussia Fulda | - | 1. FC Schweinfurt 05 | 0:2 | ||||
| 2. Round | 07/08/1999 | VfR Aalen | - | Borussia Fulda | 4:4 | ||||
| 22. Round | 12/03/2000 | TSF Ditzingen | - | Borussia Fulda | 1:1 | ||||
| 23. Round | 17/03/2000 | Borussia Fulda | - | Bayern München II | 1:0 | ||||
| 21. Round | 21/03/2000 | Borussia Fulda | - | SV Lohhof | 2:1 | ||||
| 24. Round | 25/03/2000 | SSV Reutlingen | - | Borussia Fulda | 4:1 | ||||
| 25. Round | 01/04/2000 | Borussia Fulda | - | VfB Stuttgart II | 2:1 | ||||
| 26. Round | 13/04/2000 | FSV Frankfurt | - | Borussia Fulda | 0:1 | ||||
| 27. Round | 16/04/2000 | Borussia Fulda | - | Quelle Fürth | 1:1 |  |
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| 28. Round | 20/04/2000 | SC Pfullendorf | - | Borussia Fulda | 2:0 | |
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| 29. Round | 29/04/2000 | Borussia Fulda | - | SV Darmstadt 98 | 0:0 | ||||
| 30. Round | 05/05/2000 | Wacker Burghausen | - | Borussia Fulda | 3:2 | |
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| 31. Round | 12/05/2000 | Borussia Fulda | - | Karlsruher SC II | 2:2 | ||||
| 32. Round | 17/05/2000 | TSV 1860 München II | - | Borussia Fulda | 2:1 |
Bosnia-Herzegovina