| 3. Round | 11/08/2024 | TSV Havelse | - | FC St. Pauli II | 3:1 | ||||
| 4. Round | 18/08/2024 | FC St. Pauli II | - | Eintracht Norderstedt | 1:1 | ||||
| 7. Round | 30/08/2024 | Kickers Emden | - | FC St. Pauli II | 0:1 | ||||
| 9. Round | 14/09/2024 | VfB Oldenburg | - | FC St. Pauli II | 4:0 | ||||
| 10. Round | 22/09/2024 | FC St. Pauli II | - | Werder Bremen II | 1:5 | ||||
| 11. Round | 28/09/2024 | SV Todesfelde | - | FC St. Pauli II | 2:4 | ||||
| 13. Round | 06/10/2024 | FC St. Pauli II | - | Hamburger SV II | 1:4 | ||||
| 15. Round | 20/10/2024 | FC St. Pauli II | - | Weiche Flensburg 08 | 2:2 | ||||
| 17. Round | 03/11/2024 | FC St. Pauli II | - | Bremer SV | 1:1 |  |
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| 18. Round | 10/11/2024 | FC St. Pauli II | - | SSV Jeddeloh II | 2:2 | ||||
| 26. Round | 14/03/2025 | FC St. Pauli II | - | VfB Oldenburg | 2:2 | ||||
| 28. Round | 30/03/2025 | FC St. Pauli II | - | SV Todesfelde | 4:0 | ||||
| 23. Round | 21/04/2025 | 1. FC Phönix Lübeck | - | FC St. Pauli II | 2:0 |
Sweden