| 6. Round | 24/09/2006 | SV Yesilyurt | - | Hansa Rostock II | 2:1 | ||||
| 7. Round | 30/09/2006 | Hansa Rostock II | - | BFC Preussen | 3:2 |  |
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| 10. Round | 29/10/2006 | FV Motor Eberswalde | - | Hansa Rostock II | 1:6 | ||||
| 12. Round | 12/11/2006 | FC Schönberg 95 | - | Hansa Rostock II | 1:2 | ||||
| 13. Round | 18/11/2006 | Hansa Rostock II | - | TSG Neustrelitz | 1:2 | ||||
| 14. Round | 26/11/2006 | BAK Ankaraspor 07 | - | Hansa Rostock II | 2:0 | ||||
| 16. Round | 09/12/2006 | Hansa Rostock II | - | TeBe Berlin | 2:0 | ||||
| 18. Round | 03/03/2007 | Hansa Rostock II | - | MSV 1919 Neuruppin | 3:0 | ||||
| 19. Round | 10/03/2007 | Germania Schöneiche | - | Hansa Rostock II | 1:1 | ||||
| 20. Round | 18/03/2007 | Türkiyemspor Berlin | - | Hansa Rostock II | 0:0 | ||||
| 21. Round | 25/03/2007 | Hansa Rostock II | - | SV Yesilyurt | 3:1 | ||||
| 22. Round | 01/04/2007 | BFC Preussen | - | Hansa Rostock II | 0:2 | ||||
| 17. Round | 09/04/2007 | Torgelower SV Greif | - | Hansa Rostock II | 0:0 | ||||
| 23. Round | 14/04/2007 | Hansa Rostock II | - | BFC Dynamo | 3:2 | ||||
| 24. Round | 22/04/2007 | Ludwigsfelder FC | - | Hansa Rostock II | 0:1 | ||||
| 25. Round | 29/04/2007 | Hansa Rostock II | - | FV Motor Eberswalde | 6:1 |
Germany