| 13. Round | 01/11/2015 | RB Leipzig II | - | FC Carl Zeiss Jena | 0:1 | ||||
| 14. Round | 08/11/2015 | FC Carl Zeiss Jena | - | FC Oberlausitz | 2:0 | ||||
| 15. Round | 20/11/2015 | SV Babelsberg 03 | - | FC Carl Zeiss Jena | 0:0 |  |
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| 16. Round | 29/11/2015 | FC Carl Zeiss Jena | - | FSV Zwickau | 0:1 | ||||
| 18. Round | 13/12/2015 | FC Carl Zeiss Jena | - | VfB Auerbach | 1:3 | ||||
| 19. Round | 06/02/2016 | FC Schönberg 95 | - | FC Carl Zeiss Jena | 1:0 | ||||
| 22. Round | 27/02/2016 | FC Carl Zeiss Jena | - | ZFC Meuselwitz | 0:2 | |
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| 28. Round | 16/04/2016 | FC Carl Zeiss Jena | - | Hertha BSC II | 3:5 | ||||
| 30. Round | 23/04/2016 | FC Carl Zeiss Jena | - | RB Leipzig II | 1:3 | ||||
| 31. Round | 29/04/2016 | FC Oberlausitz | - | FC Carl Zeiss Jena | 1:1 | ||||
| 32. Round | 06/05/2016 | FC Carl Zeiss Jena | - | SV Babelsberg 03 | 0:2 | ||||
| 33. Round | 15/05/2016 | FSV Zwickau | - | FC Carl Zeiss Jena | 2:0 |
Germany