| 1. Round | 23/07/2011 | Jahn Regensburg | - | SV Babelsberg 03 | 1:1 | ||||
| 2. Round | 02/08/2011 | SV Babelsberg 03 | - | Rot-Weiß Erfurt | 3:0 |  |
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| 3. Round | 06/08/2011 | Wacker Burghausen | - | SV Babelsberg 03 | 1:1 |  |
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| 4. Round | 13/08/2011 | SV Babelsberg 03 | - | 1. FC Saarbrücken | 1:3 | ||||
| 5. Round | 17/08/2011 | Preußen Münster | - | SV Babelsberg 03 | 1:1 | |
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| 6. Round | 20/08/2011 | SV Babelsberg 03 | - | 1. FC Heidenheim 1846 | 2:2 | |
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| 7. Round | 27/08/2011 | Kickers Offenbach | - | SV Babelsberg 03 | 1:1 | ||||
| 8. Round | 09/09/2011 | SV Babelsberg 03 | - | SpVgg Unterhaching | 1:2 | ||||
| 9. Round | 14/09/2011 | Chemnitzer FC | - | SV Babelsberg 03 | 2:1 | ||||
| 10. Round | 17/09/2011 | SV Babelsberg 03 | - | Rot-Weiß Oberhausen | 1:0 | |
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| 26. Round | 27/03/2012 | SV Babelsberg 03 | - | Kickers Offenbach | 0:1 | ||||
| 32. Round | 01/04/2012 | Werder Bremen II | - | SV Babelsberg 03 | 1:2 | ||||
| 33. Round | 07/04/2012 | SV Babelsberg 03 | - | VfB Stuttgart II | 1:4 | ||||
| 34. Round | 10/04/2012 | VfL Osnabrück | - | SV Babelsberg 03 | 1:0 | |
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| 36. Round | 21/04/2012 | SV Darmstadt 98 | - | SV Babelsberg 03 | 3:1 | ||||
| 38. Round | 05/05/2012 | SV Wehen Wiesbaden | - | SV Babelsberg 03 | 2:2 |
Germany