| 1. Round | 30/07/2006 | FC Ismaning | - | SpVgg Unterhaching II | 0:2 | ||||
| 2. Round | 02/08/2006 | SpVgg Unterhaching II | - | SpVgg Bayreuth | 0:0 | ||||
| 3. Round | 05/08/2006 | VfL Frohnlach | - | SpVgg Unterhaching II | 0:1 | ||||
| 5. Round | 15/08/2006 | Jahn Regensburg | - | SpVgg Unterhaching II | 1:1 | ||||
| 9. Round | 02/09/2006 | SpVgg Unterhaching II | - | SpVgg Greuther Fürth II | 0:0 | ||||
| 11. Round | 16/09/2006 | SpVgg Unterhaching II | - | 1. FC Bad Kötzting | 3:0 | ||||
| 13. Round | 30/09/2006 | SpVgg Unterhaching II | - | 1. FC Eintracht Bamberg | 1:2 |  |
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| 24. Round | 24/02/2007 | SpVgg Unterhaching II | - | Jahn Regensburg | 0:0 | ||||
| 25. Round | 03/03/2007 | Wacker Burghausen II | - | SpVgg Unterhaching II | 1:0 | |
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| 29. Round | 31/03/2007 | SpVgg Unterhaching II | - | SpVgg Weiden | 2:1 | |
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| 23. Round | 04/04/2007 | SC Fürstenfeldbruck | - | SpVgg Unterhaching II | 1:6 | ||||
| 32. Round | 21/04/2007 | 1. FC Eintracht Bamberg | - | SpVgg Unterhaching II | 0:0 | ||||
| 34. Round | 05/05/2007 | 1. SC Feucht | - | SpVgg Unterhaching II | 1:2 |  |
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| 35. Round | 11/05/2007 | SpVgg Unterhaching II | - | SV Heimstetten | 2:3 | |
Germany