| 16. Round | 10/02/2013 | FC Schalke 04 [Youth] | - | Preußen Münster [Youth] | 6:0 | ||||
| 17. Round | 17/02/2013 | Preußen Münster [Youth] | - | Arminia Bielefeld [Youth] | 2:2 |  |
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| 19. Round | 03/03/2013 | Preußen Münster [Youth] | - | Alemannia Aachen [Youth] | 7:1 | |
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| 20. Round | 17/03/2013 | Bayer Leverkusen [Youth] | - | Preußen Münster [Youth] | 6:0 | ||||
| 14. Round | 30/03/2013 | 1. FC Köln [Youth] | - | Preußen Münster [Youth] | 4:1 | |
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| 21. Round | 07/04/2013 | Preußen Münster [Youth] | - | VfL Bochum [Youth] | 0:2 | ||||
| 22. Round | 13/04/2013 | Bor. Mönchengladbach [Youth] | - | Preußen Münster [Youth] | 0:0 | ||||
| 23. Round | 21/04/2013 | Preußen Münster [Youth] | - | Rot-Weiss Essen [Youth] | 3:1 | |
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| 24. Round | 28/04/2013 | Preußen Münster [Youth] | - | Fortuna Köln [Youth] | 2:0 | ||||
| 18. Round | 30/04/2013 | Rot-Weiß Oberhausen [Youth] | - | Preußen Münster [Youth] | 4:0 |  |
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| 25. Round | 05/05/2013 | MSV Duisburg [Youth] | - | Preußen Münster [Youth] | 1:2 | |
Germany