| 1. Round | 06/08/2016 | RB Leipzig [Youth] | - | Eintracht Braunschweig [Youth] | 0:3 aet |  |
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| Round of 16 | 04/10/2016 | FC-Astoria Walldorf [Youth] | - | Eintracht Braunschweig [Youth] | 0:3 | |
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| Quarter-finals | 17/12/2016 | MSV Duisburg [Youth] | - | Eintracht Braunschweig [Youth] | 4:5 pso |  |
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| Semi-finals | 18/03/2017 | 1. FC Köln [Youth] | - | Eintracht Braunschweig [Youth] | 4:5 pso | ||||
| Final | 27/05/2017 | Eintracht Braunschweig [Youth] | - | FC Carl Zeiss Jena [Youth] | 3:0 |
Germany