| 1. Round | 12/07/2013 | 1. FC Schweinfurt 05 | - | Würzburger Kickers | 3:1 |  |
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| 11. Round | 30/08/2013 | Würzburger Kickers | - | TSV 1860 München II | 1:2 | ||||
| 18. Round | 15/10/2013 | Eintracht Bamberg | - | Würzburger Kickers | 1:1 |  |
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| 19. Round | 19/10/2013 | Würzburger Kickers | - | SpVgg Bayern Hof | 6:0 | ||||
| 20. Round | 26/10/2013 | Würzburger Kickers | - | 1. FC Schweinfurt 05 | 1:1 | ||||
| 21. Round | 02/11/2013 | Bayern München II | - | Würzburger Kickers | 4:3 | ||||
| 22. Round | 09/11/2013 | Würzburger Kickers | - | TSV 1896 Rain | 5:2 | ||||
| 23. Round | 16/11/2013 | SV Seligenporten | - | Würzburger Kickers | 0:0 | |
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| 26. Round | 08/03/2014 | Würzburger Kickers | - | FC Augsburg II | 0:1 | ||||
| 27. Round | 15/03/2014 | TSV 1860 Rosenheim | - | Würzburger Kickers | 5:1 | |
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| 28. Round | 22/03/2014 | Würzburger Kickers | - | SV Heimstetten | 2:2 |
Germany