| 21. Round | 12/03/1988 | ASG Vorwärts Stralsund | - | BSG Motor Babelsberg | 3:1 | ||||
| 22. Round | 19/03/1988 | BSG Motor Babelsberg | - | FC Vorwärts Frankfurt/Oder II | 1:2 | ||||
| 23. Round | 26/03/1988 | Stahl Eisenhüttenstadt | - | BSG Motor Babelsberg | 0:0 | ||||
| 24. Round | 31/03/1988 | BSG Motor Babelsberg | - | BSG Aktivist Brieske-Senftenberg | 1:1 | ||||
| 25. Round | 04/04/1988 | BSG Energie Cottbus | - | BSG Motor Babelsberg | 3:0 | ||||
| 26. Round | 08/04/1988 | BSG Motor Babelsberg | - | BSG Rotation Berlin | 1:3 |  |
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| 27. Round | 15/04/1988 | Motor Schönebeck | - | BSG Motor Babelsberg | 1:0 |  |
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| 28. Round | 22/04/1988 | BSG Motor Babelsberg | - | BSG Post Neubrandenburg | 0:0 | ||||
| 29. Round | 29/04/1988 | Motor Ludwigsfelde | - | BSG Motor Babelsberg | 0:1 | ||||
| 30. Round | 07/05/1988 | BSG Motor Babelsberg | - | BSG KKW Greifswald | 5:1 | |
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| 31. Round | 10/05/1988 | Dynamo Fürstenwalde | - | BSG Motor Babelsberg | 2:2 | ||||
| 32. Round | 14/05/1988 | BSG Motor Babelsberg | - | BFC Dynamo II | 2:1 | ||||
| 33. Round | 19/05/1988 | BSG Aktivist Schwarze Pumpe Hoyerswerda | - | BSG Motor Babelsberg | 0:2 | ||||
| 34. Round | 28/05/1988 | BSG Motor Babelsberg | - | Hansa Rostock II | 0:2 |
Germany