| 13. Round | 08/10/2016 | VfR Neumünster | - | Heider SV | 3:1 |  |
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| 14. Round | 15/10/2016 | Heider SV | - | PSV Union Neumünster | 2:1 | ||||
| 15. Round | 22/10/2016 | TSV Schilksee | - | Heider SV | 2:1 | ||||
| 16. Round | 29/10/2016 | Heider SV | - | Holstein Kiel II | 3:1 | ||||
| 17. Round | 05/11/2016 | Heider SV | - | Kilia Kiel | 3:1 |  |
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| 18. Round | 12/11/2016 | TSB Flensburg | - | Heider SV | 2:2 | ||||
| 20. Round | 27/11/2016 | TuS Hartenholm | - | Heider SV | 0:3 | ||||
| 22. Round | 25/02/2017 | Heider SV | - | Flensburg 08 | 1:1 | ||||
| 24. Round | 11/03/2017 | TSV Kropp | - | Heider SV | 1:2 | ||||
| 25. Round | 18/03/2017 | Heider SV | - | Oldenburger SV | 2:0 | |
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| 26. Round | 25/03/2017 | TSV Altenholz | - | Heider SV | 2:0 | ||||
| 28. Round | 09/04/2017 | NTSV Strand 08 | - | Heider SV | 6:3 |
Germany