| 2. Round | 12/08/2016 | Fortuna Düsseldorf | - | VfB Stuttgart | 1:0 | ||||
| 5. Round | 17/09/2016 | 1. FC Heidenheim 1846 | - | Fortuna Düsseldorf | 2:0 | ||||
| 6. Round | 20/09/2016 | Fortuna Düsseldorf | - | VfL Bochum | 3:0 | ||||
| 7. Round | 23/09/2016 | Eintracht Braunschweig | - | Fortuna Düsseldorf | 2:1 | ||||
| 8. Round | 01/10/2016 | Fortuna Düsseldorf | - | Karlsruher SC | 1:1 |  |
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| 12. Round | 04/11/2016 | Fortuna Düsseldorf | - | Dynamo Dresden | 0:3 | ||||
| 13. Round | 20/11/2016 | FC St. Pauli | - | Fortuna Düsseldorf | 0:1 | ||||
| 14. Round | 25/11/2016 | Fortuna Düsseldorf | - | Hannover 96 | 2:2 | ||||
| 15. Round | 04/12/2016 | Würzburger Kickers | - | Fortuna Düsseldorf | 0:0 | ||||
| 16. Round | 09/12/2016 | Fortuna Düsseldorf | - | 1. FC Nürnberg | 0:2 |
Germany