| 1. Round | 21/07/2012 | FC Ismaning | - | Würzburger Kickers | 2:0 | ||||
| 2. Round | 25/07/2012 | FC Augsburg II | - | FC Ismaning | 2:3 | ||||
| 3. Round | 28/07/2012 | FC Ismaning | - | SpVgg Bayern Hof | 0:1 | ||||
| 4. Round | 04/08/2012 | SV Heimstetten | - | FC Ismaning | 1:1 | ||||
| 5. Round | 08/08/2012 | FC Ismaning | - | TSV 1860 München II | 1:0 | ||||
| 6. Round | 11/08/2012 | SC Eltersdorf | - | FC Ismaning | 0:0 | ||||
| 7. Round | 14/08/2012 | FC Ismaning | - | FC Memmingen | 0:0 | ||||
| 8. Round | 18/08/2012 | FC Ingolstadt 04 II | - | FC Ismaning | 2:2 | ||||
| 9. Round | 25/08/2012 | FC Ismaning | - | TSV 1860 Rosenheim | 3:0 | ||||
| 10. Round | 02/09/2012 | 1. FC Nürnberg II | - | FC Ismaning | 0:0 | ||||
| 11. Round | 08/09/2012 | FC Ismaning | - | TSV Buchbach | 0:0 | ||||
| 12. Round | 15/09/2012 | VfL Frohnlach | - | FC Ismaning | 2:2 |  |
|||
| 13. Round | 22/09/2012 | FC Ismaning | - | Eintracht Bamberg | 0:1 | ||||
| 14. Round | 30/09/2012 | Bayern München II | - | FC Ismaning | 2:0 | ||||
| 15. Round | 03/10/2012 | FV Illertissen | - | FC Ismaning | 1:1 | ||||
| 16. Round | 06/10/2012 | FC Ismaning | - | SpVgg Greuther Fürth II | 1:3 | ||||
| 17. Round | 13/10/2012 | Viktoria Aschaffenburg | - | FC Ismaning | 1:1 | |
Germany