| 1. Round | 06/08/2006 | Schwarz-Weiß Essen | - | MSV Duisburg II | 3:0 | ||||
| 4. Round | 20/08/2006 | MSV Duisburg II | - | Alemannia Aachen II | 3:5 | ||||
| 6. Round | 03/09/2006 | MSV Duisburg II | - | SSVg Velbert | 0:3 | ||||
| 7. Round | 10/09/2006 | Rot-Weiß Oberhausen | - | MSV Duisburg II | 1:0 | ||||
| 10. Round | 01/10/2006 | MSV Duisburg II | - | TuRU Düsseldorf | 1:0 | ||||
| 13. Round | 29/10/2006 | MSV Duisburg II | - | 1. FC Bocholt | 2:1 | ||||
| 18. Round | 09/12/2006 | MSV Duisburg II | - | Schwarz-Weiß Essen | 1:5 | ||||
| 19. Round | 16/12/2006 | Union Solingen | - | MSV Duisburg II | 2:1 |  |
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| 21. Round | 25/02/2007 | Alemannia Aachen II | - | MSV Duisburg II | 3:0 | ||||
| 25. Round | 23/03/2007 | 1. FC Kleve | - | MSV Duisburg II | 0:1 | ||||
| 30. Round | 06/05/2007 | 1. FC Bocholt | - | MSV Duisburg II | 2:1 | ||||
| 33. Round | 24/05/2007 | MSV Duisburg II | - | GFC Düren | 2:0 | ||||
| 34. Round | 03/06/2007 | Bonner SC | - | MSV Duisburg II | 1:3 |
Germany