| 1. Round | 13/08/2016 | Niendorfer TSV [Youth B] | - | Werder Bremen [Youth B] | 0:7 | ||||
| 3. Round | 27/08/2016 | Niendorfer TSV [Youth B] | - | Dynamo Dresden [Youth B] | 1:3 | ||||
| 4. Round | 04/09/2016 | FC St. Pauli [Youth B] | - | Niendorfer TSV [Youth B] | 1:0 | ||||
| 5. Round | 17/09/2016 | Holstein Kiel [Youth B] | - | Niendorfer TSV [Youth B] | 4:1 | ||||
| 6. Round | 24/09/2016 | Niendorfer TSV [Youth B] | - | VfL Wolfsburg [Youth B] | 2:2 | ||||
| 7. Round | 08/10/2016 | 1. FC Union Berlin [Youth B] | - | Niendorfer TSV [Youth B] | 2:3 | ||||
| 8. Round | 15/10/2016 | Niendorfer TSV [Youth B] | - | Hamburger SV [Youth B] | 2:3 |  |
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| 11. Round | 05/11/2016 | TeBe Berlin [Youth B] | - | Niendorfer TSV [Youth B] | 2:0 | ||||
| 12. Round | 12/11/2016 | Niendorfer TSV [Youth B] | - | Hertha BSC [Youth B] | 0:4 |
Germany