| 1. Round | 08/08/2009 | SV Wilhelmshaven | - | Chemnitzer FC | 2:2 |  |
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| 2. Round | 15/08/2009 | VfL Wolfsburg II | - | SV Wilhelmshaven | 2:0 | ||||
| 3. Round | 21/08/2009 | SV Wilhelmshaven | - | FC Oberneuland | 2:3 |  |
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| 5. Round | 02/09/2009 | SV Wilhelmshaven | - | ZFC Meuselwitz | 0:0 | ||||
| 6. Round | 06/09/2009 | 1. FC Magdeburg | - | SV Wilhelmshaven | 5:2 | ||||
| 7. Round | 12/09/2009 | SV Wilhelmshaven | - | Hamburger SV II | 2:2 | |
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| 8. Round | 20/09/2009 | Türkiyemspor Berlin | - | SV Wilhelmshaven | 0:0 | ||||
| 10. Round | 04/10/2009 | VFC Plauen | - | SV Wilhelmshaven | 0:1 | ||||
| 12. Round | 23/10/2009 | SV Wilhelmshaven | - | SV Babelsberg 03 | 1:2 | ||||
| 13. Round | 31/10/2009 | Hannover 96 II | - | SV Wilhelmshaven | 5:2 | ||||
| 14. Round | 06/11/2009 | SV Wilhelmshaven | - | Hallescher FC | 0:2 | ||||
| 15. Round | 21/11/2009 | Goslarer SC | - | SV Wilhelmshaven | 2:2 | ||||
| 16. Round | 27/11/2009 | SV Wilhelmshaven | - | FC St. Pauli II | 2:1 | ||||
| 17. Round | 05/12/2009 | Hertha BSC II | - | SV Wilhelmshaven | 1:3 |
Germany