| 1. Round | 20/08/2006 | Werder Bremen [Youth] | - | Rot-Weiß Erfurt [Youth] | 3:1 |  |
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| 2. Round | 26/08/2006 | Hansa Rostock [Youth] | - | Werder Bremen [Youth] | 2:3 | |
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| 3. Round | 03/09/2006 | Werder Bremen [Youth] | - | Holstein Kiel [Youth] | 6:0 | ||||
| 4. Round | 09/09/2006 | SC Vier- u. Marschlande [Youth] | - | Werder Bremen [Youth] | 1:5 | ||||
| 5. Round | 17/09/2006 | Tasmania Gropiusstadt [Youth] | - | Werder Bremen [Youth] | 0:8 | ||||
| 6. Round | 24/09/2006 | Werder Bremen [Youth] | - | VfL Wolfsburg [Youth] | 1:0 | ||||
| 7. Round | 01/10/2006 | TeBe Berlin [Youth] | - | Werder Bremen [Youth] | 0:8 | ||||
| 8. Round | 15/10/2006 | Werder Bremen [Youth] | - | Chemnitzer FC [Youth] | 6:0 |  |
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| 10. Round | 05/11/2006 | Werder Bremen [Youth] | - | Hertha BSC [Youth] | 2:0 | ||||
| 11. Round | 11/11/2006 | Hannover 96 [Youth] | - | Werder Bremen [Youth] | 0:1 | ||||
| 12. Round | 25/11/2006 | Werder Bremen [Youth] | - | SG Sachsen Leipzig [Youth] | 1:1 | ||||
| 13. Round | 02/12/2006 | Hamburger SV [Youth] | - | Werder Bremen [Youth] | 3:2 | |
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| 14. Round | 18/02/2007 | Rot-Weiß Erfurt [Youth] | - | Werder Bremen [Youth] | 0:6 |
Germany