| 1. Round | 06/08/2016 | FC Anker Wismar | - | Victoria Seelow | 3:2 | ||||
| 2. Round | 14/08/2016 | Hansa Rostock II | - | FC Anker Wismar | 3:2 | ||||
| 3. Round | 27/08/2016 | FC Anker Wismar | - | FC Strausberg | 2:2 | ||||
| 4. Round | 10/09/2016 | FC Mecklenburg Schwerin | - | FC Anker Wismar | 1:2 | ||||
| 5. Round | 17/09/2016 | FC Anker Wismar | - | 1. FC Frankfurt (Oder) | 3:0 | ||||
| 6. Round | 24/09/2016 | SV Grün-Weiß Brieselang | - | FC Anker Wismar | 1:4 | ||||
| 7. Round | 01/10/2016 | FC Anker Wismar | - | Hertha Zehlendorf | 1:2 |  |
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| 8. Round | 16/10/2016 | SV Altlüdersdorf | - | FC Anker Wismar | 2:0 dec. |  |
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| 9. Round | 22/10/2016 | SV Lichtenberg 47 | - | FC Anker Wismar | 3:0 | ||||
| 10. Round | 30/10/2016 | FC Anker Wismar | - | CFC Hertha 06 | 6:1 | ||||
| 11. Round | 05/11/2016 | Germania Schöneiche | - | FC Anker Wismar | 2:2 | ||||
| 12. Round | 19/11/2016 | FC Anker Wismar | - | VSG Altglienicke | 1:2 | ||||
| 13. Round | 26/11/2016 | Optik Rathenow | - | FC Anker Wismar | 2:1 | |
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| 14. Round | 03/12/2016 | FC Anker Wismar | - | Malchower SV 90 | 3:1 | ||||
| 15. Round | 09/12/2016 | TeBe Berlin | - | FC Anker Wismar | 0:1 |
Ukraine