| 1. Round | 13/08/2016 | ASC 09 Dortmund | - | FC Brünninghausen | 1:3 | ||||
| 2. Round | 21/08/2016 | FC Brünninghausen | - | 1. FC Kaan-Marienborn | 2:2 | ||||
| 3. Round | 28/08/2016 | SC Paderborn 07 II | - | FC Brünninghausen | 1:0 | ||||
| 9. Round | 09/10/2016 | TSV Marl-Hüls | - | FC Brünninghausen | 2:1 | ||||
| 10. Round | 16/10/2016 | FC Brünninghausen | - | SC Hassel | 0:2 | ||||
| 11. Round | 23/10/2016 | SpVgg Erkenschwick | - | FC Brünninghausen | 1:4 | ||||
| 12. Round | 30/10/2016 | FC Brünninghausen | - | FC Gütersloh 2000 | 0:0 | ||||
| 13. Round | 06/11/2016 | Arminia Bielefeld II | - | FC Brünninghausen | 7:0 | ||||
| 15. Round | 27/11/2016 | Westfalia Rhynern | - | FC Brünninghausen | 0:0 | ||||
| 18. Round | 17/12/2016 | FC Brünninghausen | - | ASC 09 Dortmund | 1:1 | ||||
| 22. Round | 12/03/2017 | FC Brünninghausen | - | TuS Erndtebrück | 0:0 | ||||
| 24. Round | 26/03/2017 | FC Brünninghausen | - | Hammer SpVg | 0:1 | ||||
| 26. Round | 09/04/2017 | FC Brünninghausen | - | TSV Marl-Hüls | 4:2 | ||||
| 27. Round | 13/04/2017 | SC Hassel | - | FC Brünninghausen | 2:0 |
Croatia