| 21. Round | 24/02/2001 | Wacker Burghausen | - | Sportfreunde Siegen | 0:0 | ||||
| 22. Round | 03/03/2001 | TSV 1860 München II | - | Wacker Burghausen | 1:1 | ||||
| 23. Round | 10/03/2001 | Wacker Burghausen | - | Karlsruher SC | 1:0 | ||||
| 24. Round | 17/03/2001 | SV 07 Elversberg | - | Wacker Burghausen | 1:2 | ||||
| 25. Round | 30/03/2001 | Wacker Burghausen | - | SV Darmstadt 98 | 2:1 |  |
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| 26. Round | 07/04/2001 | Wacker Burghausen | - | SC Pfullendorf | 1:2 | |
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| 27. Round | 12/04/2001 | Jahn Regensburg | - | Wacker Burghausen | 1:1 | ||||
| 28. Round | 21/04/2001 | Wacker Burghausen | - | Eintracht Trier | 0:1 | |
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| 29. Round | 28/04/2001 | Rot-Weiß Erfurt | - | Wacker Burghausen | 0:1 | ||||
| 30. Round | 04/05/2001 | Wacker Burghausen | - | Bayern München II | 3:3 | |
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| 31. Round | 12/05/2001 | VfR Mannheim | - | Wacker Burghausen | 1:1 | |
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| 32. Round | 18/05/2001 | Wacker Burghausen | - | VfB Stuttgart II | 1:1 | ||||
| 33. Round | 23/05/2001 | Kickers Offenbach | - | Wacker Burghausen | 0:0 | |
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| 34. Round | 26/05/2001 | Wacker Burghausen | - | 1. FC Schweinfurt 05 | 1:1 |
Congo