| 1. Round | 31/07/2016 | 1. FC Magdeburg | - | Fortuna Köln | 0:3 | ||||
| 2. Round | 05/08/2016 | Fortuna Köln | - | Werder Bremen II | 2:0 | ||||
| 3. Round | 09/08/2016 | SV Wehen Wiesbaden | - | Fortuna Köln | 3:0 |  |
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| 4. Round | 13/08/2016 | Fortuna Köln | - | Holstein Kiel | 1:0 | ||||
| 5. Round | 27/08/2016 | Rot-Weiß Erfurt | - | Fortuna Köln | 3:0 | ||||
| 6. Round | 10/09/2016 | Fortuna Köln | - | Chemnitzer FC | 1:0 | ||||
| 7. Round | 17/09/2016 | Jahn Regensburg | - | Fortuna Köln | 2:2 |
Germany