| 1. Round | 12/08/2012 | Hansa Rostock [Youth] | - | Werder Bremen [Youth] | 3:1 | ||||
| 2. Round | 19/08/2012 | Werder Bremen [Youth] | - | Energie Cottbus [Youth] | 4:0 | ||||
| 3. Round | 26/08/2012 | FC St. Pauli [Youth] | - | Werder Bremen [Youth] | 1:1 | ||||
| 4. Round | 29/08/2012 | Werder Bremen [Youth] | - | Hannover 96 [Youth] | 5:1 | ||||
| 5. Round | 15/09/2012 | Hamburger SV [Youth] | - | Werder Bremen [Youth] | 0:4 | ||||
| 7. Round | 30/09/2012 | Hertha BSC [Youth] | - | Werder Bremen [Youth] | 0:1 | ||||
| 8. Round | 21/10/2012 | Werder Bremen [Youth] | - | FC Carl Zeiss Jena [Youth] | 5:2 | ||||
| 10. Round | 04/11/2012 | Werder Bremen [Youth] | - | Chemnitzer FC [Youth] | 3:0 | ||||
| 11. Round | 11/11/2012 | Werder Bremen [Youth] | - | Rot-Weiß Erfurt [Youth] | 4:4 |  |
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| 14. Round | 08/12/2012 | Werder Bremen [Youth] | - | Hansa Rostock [Youth] | 2:0 | ||||
| 16. Round | 09/02/2013 | Werder Bremen [Youth] | - | FC St. Pauli [Youth] | 1:0 | ||||
| 17. Round | 16/02/2013 | Hannover 96 [Youth] | - | Werder Bremen [Youth] | 5:2 | ||||
| 13. Round | 20/02/2013 | Werder Bremen [Youth] | - | VfL Wolfsburg [Youth] | 0:5 | ||||
| 19. Round | 03/03/2013 | Holstein Kiel [Youth] | - | Werder Bremen [Youth] | 3:2 |
Germany