| 6. Round | 21/08/2016 | Flensburg 08 | - | Oldenburger SV | 0:0 | ||||
| 22. Round | 25/02/2017 | Heider SV | - | Flensburg 08 | 1:1 |  |
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| 23. Round | 04/03/2017 | Flensburg 08 | - | SV Eutin 08 | 0:3 | ||||
| 26. Round | 25/03/2017 | Kilia Kiel | - | Flensburg 08 | 0:1 | ||||
| 27. Round | 01/04/2017 | Flensburg 08 | - | TSV Lägerdorf | 3:0 | ||||
| 28. Round | 08/04/2017 | TSB Flensburg | - | Flensburg 08 | 5:2 | ||||
| 34. Round | 15/04/2017 | Holstein Kiel II | - | Flensburg 08 | 1:1 | ||||
| 29. Round | 22/04/2017 | Flensburg 08 | - | TuS Hartenholm | 1:5 |
Germany