| 20. Round | 12/03/2016 | 1. FC Magdeburg [Youth B] | - | FC St. Pauli [Youth B] | 1:3 | ||||
| 21. Round | 02/04/2016 | Hannover 96 [Youth B] | - | 1. FC Magdeburg [Youth B] | 1:4 | ||||
| 22. Round | 09/04/2016 | Werder Bremen [Youth B] | - | 1. FC Magdeburg [Youth B] | 2:0 | ||||
| 25. Round | 28/05/2016 | 1. FC Magdeburg [Youth B] | - | VfL Wolfsburg [Youth B] | 2:4 | ||||
| 26. Round | 05/06/2016 | Dynamo Dresden [Youth B] | - | 1. FC Magdeburg [Youth B] | 4:0 |
Germany