| 1. Round | 27/07/2024 | SSV Jeddeloh II | - | FC St. Pauli II | 1:0 | ||||
| 14. Round | 13/10/2024 | Holstein Kiel II | - | FC St. Pauli II | 0:4 | ||||
| 5. Round | 20/11/2024 | FC Teutonia 05 | - | FC St. Pauli II | 1:4 | ||||
| 19. Round | 14/12/2024 | VfB Lübeck | - | FC St. Pauli II | 2:0 |  |
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| 24. Round | 02/03/2025 | FC St. Pauli II | - | Kickers Emden | 1:0 | ||||
| 20. Round | 26/03/2025 | FC St. Pauli II | - | TSV Havelse | 1:0 | |
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| 28. Round | 30/03/2025 | FC St. Pauli II | - | SV Todesfelde | 4:0 |  |
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| 29. Round | 06/04/2025 | SV Meppen | - | FC St. Pauli II | 2:0 | ||||
| 30. Round | 12/04/2025 | Hamburger SV II | - | FC St. Pauli II | 4:2 | ||||
| 27. Round | 17/04/2025 | Werder Bremen II | - | FC St. Pauli II | 3:1 | ||||
| 23. Round | 21/04/2025 | 1. FC Phönix Lübeck | - | FC St. Pauli II | 2:0 | ||||
| 32. Round | 03/05/2025 | Weiche Flensburg 08 | - | FC St. Pauli II | 0:1 | ||||
| 33. Round | 11/05/2025 | FC St. Pauli II | - | SV Drochtersen/Assel | 3:4 |
Germany