| 7. Round | 13/09/2009 | FC St. Pauli II | - | VfL Wolfsburg II | 1:0 |  |
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| 10. Round | 04/10/2009 | ZFC Meuselwitz | - | FC St. Pauli II | 0:0 | |
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| 11. Round | 16/10/2009 | FC St. Pauli II | - | 1. FC Magdeburg | 0:3 | ||||
| 13. Round | 31/10/2009 | FC St. Pauli II | - | Türkiyemspor Berlin | 2:2 | ||||
| 16. Round | 27/11/2009 | SV Wilhelmshaven | - | FC St. Pauli II | 2:1 | ||||
| 30. Round | 25/04/2010 | Türkiyemspor Berlin | - | FC St. Pauli II | 3:3 | ||||
| 31. Round | 02/05/2010 | FC St. Pauli II | - | Hansa Rostock II | 1:2 | ||||
| 32. Round | 09/05/2010 | VFC Plauen | - | FC St. Pauli II | 6:0 | ||||
| 33. Round | 22/05/2010 | FC St. Pauli II | - | SV Wilhelmshaven | 0:3 | ||||
| 34. Round | 29/05/2010 | SV Babelsberg 03 | - | FC St. Pauli II | 4:1 |  |
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Germany