| 10. Round | 07/10/2012 | FK Baumit Jablonec | - | Dynamo České Budějovice | 2:1 | ||||
| 11. Round | 20/10/2012 | Viktoria Plzeň | - | FK Baumit Jablonec | 1:1 | ||||
| 12. Round | 27/10/2012 | FK Baumit Jablonec | - | Slavia Praha | 0:0 | ||||
| 13. Round | 02/11/2012 | Vysočina Jihlava | - | FK Baumit Jablonec | 0:1 | ||||
| 14. Round | 10/11/2012 | FK Baumit Jablonec | - | FK Mladá Boleslav | 2:3 | ||||
| 15. Round | 18/11/2012 | Sigma Olomouc | - | FK Baumit Jablonec | 0:1 |  |
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| 16. Round | 24/11/2012 | FK Baumit Jablonec | - | FC Hradec Králové | 3:2 | ||||
| 17. Round | 23/02/2013 | Slovan Liberec | - | FK Baumit Jablonec | 1:0 | ||||
| 21. Round | 30/03/2013 | 1. FK Příbram | - | FK Baumit Jablonec | 3:3 | ||||
| 22. Round | 07/04/2013 | FK Baumit Jablonec | - | 1. FC Slovácko | 4:1 | ||||
| 23. Round | 13/04/2013 | FK Dukla Praha | - | FK Baumit Jablonec | 5:1 | ||||
| 24. Round | 19/04/2013 | Dynamo České Budějovice | - | FK Baumit Jablonec | 2:1 | ||||
| 25. Round | 27/04/2013 | FK Baumit Jablonec | - | Viktoria Plzeň | 1:3 | ||||
| 28. Round | 22/05/2013 | FK Mladá Boleslav | - | FK Baumit Jablonec | 1:1 |
Czech Republic