| 1. Round | 23/07/2011 | Wacker Burghausen | - | Rot-Weiß Oberhausen | 3:2 | ||||
| 2. Round | 02/08/2011 | FC Carl Zeiss Jena | - | Wacker Burghausen | 1:0 |  |
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| 3. Round | 06/08/2011 | Wacker Burghausen | - | SV Babelsberg 03 | 1:1 | ||||
| 4. Round | 13/08/2011 | Werder Bremen II | - | Wacker Burghausen | 1:1 | |
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| 5. Round | 16/08/2011 | Wacker Burghausen | - | VfB Stuttgart II | 1:1 | ||||
| 6. Round | 20/08/2011 | VfL Osnabrück | - | Wacker Burghausen | 1:1 |  |
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| 11. Round | 24/09/2011 | Wacker Burghausen | - | Jahn Regensburg | 1:1 | ||||
| 21. Round | 17/12/2011 | Rot-Weiß Oberhausen | - | Wacker Burghausen | 2:0 | ||||
| 22. Round | 21/01/2012 | SV Babelsberg 03 | - | Wacker Burghausen | 0:2 | ||||
| 31. Round | 24/03/2012 | Wacker Burghausen | - | Rot-Weiß Erfurt | 1:1 | ||||
| 32. Round | 31/03/2012 | Wacker Burghausen | - | SV Sandhausen | 0:0 | |
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| 34. Round | 11/04/2012 | Wacker Burghausen | - | Preußen Münster | 1:0 | ||||
| 35. Round | 14/04/2012 | 1. FC Heidenheim 1846 | - | Wacker Burghausen | 1:1 | ||||
| 36. Round | 21/04/2012 | Wacker Burghausen | - | Kickers Offenbach | 2:3 |  |
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| 37. Round | 28/04/2012 | SpVgg Unterhaching | - | Wacker Burghausen | 4:0 |
Germany