| 1. Round | 21/07/2012 | TSV 1860 Rosenheim | - | FC Memmingen | 0:2 | ||||
| 2. Round | 25/07/2012 | FC Memmingen | - | 1. FC Nürnberg II | 1:1 | ||||
| 3. Round | 28/07/2012 | TSV Buchbach | - | FC Memmingen | 2:1 | ||||
| 4. Round | 03/08/2012 | FC Memmingen | - | VfL Frohnlach | 2:2 | ||||
| 5. Round | 07/08/2012 | Eintracht Bamberg | - | FC Memmingen | 1:1 |  |
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| 6. Round | 11/08/2012 | FC Memmingen | - | Bayern München II | 0:0 | |
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| 8. Round | 17/08/2012 | FC Memmingen | - | SpVgg Greuther Fürth II | 0:2 | |
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| 9. Round | 25/08/2012 | Viktoria Aschaffenburg | - | FC Memmingen | 0:2 | ||||
| 10. Round | 31/08/2012 | FC Memmingen | - | TSV 1896 Rain | 2:0 | ||||
| 13. Round | 21/09/2012 | FC Augsburg II | - | FC Memmingen | 1:1 | ||||
| 14. Round | 28/09/2012 | FC Memmingen | - | SpVgg Bayern Hof | 1:0 | ||||
| 15. Round | 02/10/2012 | SV Heimstetten | - | FC Memmingen | 1:0 | ||||
| 16. Round | 05/10/2012 | FC Memmingen | - | TSV 1860 München II | 1:1 | ||||
| 18. Round | 20/10/2012 | FV Illertissen | - | FC Memmingen | 1:0 | ||||
| 19. Round | 26/10/2012 | FC Memmingen | - | FC Ingolstadt 04 II | 2:4 | ||||
| 22. Round | 16/11/2012 | FC Memmingen | - | TSV Buchbach | 0:2 | ||||
| 23. Round | 24/11/2012 | VfL Frohnlach | - | FC Memmingen | 0:1 | |
Germany