| 1. Round | 11/08/2013 | FC Carl Zeiss Jena [Youth] | - | Werder Bremen [Youth] | 1:2 | ||||
| 3. Round | 24/08/2013 | FC Carl Zeiss Jena [Youth] | - | VfL Wolfsburg [Youth] | 2:8 | ||||
| 4. Round | 31/08/2013 | VfL Osnabrück [Youth] | - | FC Carl Zeiss Jena [Youth] | 1:2 |  |
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| 5. Round | 14/09/2013 | 1. FC Union Berlin [Youth] | - | FC Carl Zeiss Jena [Youth] | 1:1 | ||||
| 7. Round | 05/10/2013 | FC St. Pauli [Youth] | - | FC Carl Zeiss Jena [Youth] | 0:1 | ||||
| 11. Round | 09/11/2013 | Dynamo Dresden [Youth] | - | FC Carl Zeiss Jena [Youth] | 5:0 | ||||
| 16. Round | 16/02/2014 | VfL Wolfsburg [Youth] | - | FC Carl Zeiss Jena [Youth] | 5:0 | ||||
| 14. Round | 29/03/2014 | Werder Bremen [Youth] | - | FC Carl Zeiss Jena [Youth] | 4:2 | ||||
| 24. Round | 04/05/2014 | FC Carl Zeiss Jena [Youth] | - | Dynamo Dresden [Youth] | 0:3 | |
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| 25. Round | 11/05/2014 | Hansa Rostock [Youth] | - | FC Carl Zeiss Jena [Youth] | 0:0 | ||||
| 26. Round | 25/05/2014 | FC Carl Zeiss Jena [Youth] | - | Hannover 96 [Youth] | 2:3 |
Germany