| 1. Round | 07/08/2016 | SC Freiburg II | - | SV Spielberg | 2:1 |  |
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| 2. Round | 13/08/2016 | SV Oberachern | - | SC Freiburg II | 0:3 | ||||
| 3. Round | 17/08/2016 | SC Freiburg II | - | FSV 08 Bissingen | 0:4 |  |
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| 4. Round | 21/08/2016 | Bahlinger SC | - | SC Freiburg II | 0:0 | |
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| 5. Round | 27/08/2016 | SC Freiburg II | - | Stuttgarter Kickers II | 2:0 | ||||
| 6. Round | 31/08/2016 | FV Ravensburg | - | SC Freiburg II | 2:1 | ||||
| 7. Round | 04/09/2016 | SC Freiburg II | - | SpVgg Neckarelz | 6:0 | ||||
| 8. Round | 10/09/2016 | SV Sandhausen II | - | SC Freiburg II | 0:2 | ||||
| 10. Round | 24/09/2016 | Offenburger FV | - | SC Freiburg II | 0:4 | ||||
| 11. Round | 01/10/2016 | SC Freiburg II | - | Göppinger SV | 2:0 | |
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| 12. Round | 09/10/2016 | Karlsruher SC II | - | SC Freiburg II | 0:3 | ||||
| 13. Round | 15/10/2016 | FSV Hollenbach | - | SC Freiburg II | 0:3 | ||||
| 14. Round | 23/10/2016 | SC Freiburg II | - | SSV Reutlingen | 2:0 | ||||
| 15. Round | 29/10/2016 | Neckarsulmer Sport-Union | - | SC Freiburg II | 1:0 | ||||
| 32. Round | 07/05/2017 | SC Freiburg II | - | Neckarsulmer Sport-Union | 4:0 |
Germany