| 11. Round | 18/11/2023 | FC St. Pauli [Youth] | - | FC Carl Zeiss Jena [Youth] | 2:0 | ||||
| 12. Round | 25/11/2023 | VfL Wolfsburg [Youth] | - | FC St. Pauli [Youth] | 2:2 | ||||
| 13. Round | 27/01/2024 | FC St. Pauli [Youth] | - | Hamburger SV [Youth] | 2:0 | ||||
| 15. Round | 03/02/2024 | VfL Osnabrück [Youth] | - | FC St. Pauli [Youth] | 2:2 | ||||
| 17. Round | 17/02/2024 | Hannover 96 [Youth] | - | FC St. Pauli [Youth] | 2:1 | ||||
| 18. Round | 24/02/2024 | FC St. Pauli [Youth] | - | Hertha BSC [Youth] | 0:1 | ||||
| 19. Round | 02/03/2024 | Dynamo Dresden [Youth] | - | FC St. Pauli [Youth] | 1:0 | ||||
| 20. Round | 09/03/2024 | FC St. Pauli [Youth] | - | Eintracht Braunschweig [Youth] | 2:2 | ||||
| 21. Round | 06/04/2024 | SV Meppen [Youth] | - | FC St. Pauli [Youth] | 1:3 |  |
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| 22. Round | 13/04/2024 | FC St. Pauli [Youth] | - | 1. FC Union Berlin [Youth] | 0:1 | ||||
| 23. Round | 20/04/2024 | FC St. Pauli [Youth] | - | Werder Bremen [Youth] | 2:3 | ||||
| 24. Round | 27/04/2024 | FC Carl Zeiss Jena [Youth] | - | FC St. Pauli [Youth] | 3:6 |  |
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| 25. Round | 04/05/2024 | FC St. Pauli [Youth] | - | VfL Wolfsburg [Youth] | 0:5 | ||||
| 26. Round | 11/05/2024 | Hamburger SV [Youth] | - | FC St. Pauli [Youth] | 3:2 |
Germany