| 6. Round | 24/09/1988 | 1. FC Union Berlin | - | FC Carl Zeiss Jena | 1:1 | ||||
| 7. Round | 30/09/1988 | FC Carl Zeiss Jena | - | Rot-Weiß Erfurt | 3:0 | ||||
| 8. Round | 12/10/1988 | 1. FC Magdeburg | - | FC Carl Zeiss Jena | 0:2 | ||||
| 9. Round | 22/10/1988 | FC Carl Zeiss Jena | - | Dynamo Dresden | 3:4 | ||||
| 10. Round | 05/11/1988 | BSG Stahl Brandenburg | - | FC Carl Zeiss Jena | 1:0 | ||||
| 11. Round | 12/11/1988 | FC Carl Zeiss Jena | - | BSG Sachsenring Zwickau | 2:0 | ||||
| 12. Round | 19/11/1988 | BFC Dynamo | - | FC Carl Zeiss Jena | 1:1 | ||||
| 13. Round | 03/12/1988 | FC Carl Zeiss Jena | - | 1. FC Lokomotive Leipzig | 0:1 |
Germany