| 9. Round | 23/10/2016 | 1. FC Magdeburg [Youth B] | - | Werder Bremen [Youth B] | 1:3 | ||||
| 19. Round | 04/03/2017 | TeBe Berlin [Youth B] | - | 1. FC Magdeburg [Youth B] | 1:2 | ||||
| 21. Round | 18/03/2017 | Holstein Kiel [Youth B] | - | 1. FC Magdeburg [Youth B] | 5:1 |  |
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| 22. Round | 02/04/2017 | Werder Bremen [Youth B] | - | 1. FC Magdeburg [Youth B] | 5:0 | ||||
| 24. Round | 22/04/2017 | Dynamo Dresden [Youth B] | - | 1. FC Magdeburg [Youth B] | 1:0 |
Germany