7. Round | 26/09/2016 | 1. FC Union Berlin | - | FC St. Pauli | 2:0 | ||||
8. Round | 01/10/2016 | Hannover 96 | - | FC St. Pauli | 2:0 | ||||
11. Round | 31/10/2016 | FC St. Pauli | - | 1. FC Nürnberg | 1:1 | ||||
12. Round | 07/11/2016 | Würzburger Kickers | - | FC St. Pauli | 1:0 | ||||
19. Round | 05/02/2017 | Eintracht Braunschweig | - | FC St. Pauli | 1:2 | ||||
21. Round | 19/02/2017 | Arminia Bielefeld | - | FC St. Pauli | 1:1 |