| 4. Round | 02/08/2016 | TSV 1860 München II | - | TSV 1860 Rosenheim | 1:0 |  |
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| 11. Round | 17/09/2016 | 1. FC Schweinfurt 05 | - | TSV 1860 München II | 1:2 | |
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| 12. Round | 24/09/2016 | TSV 1860 München II | - | 1. FC Nürnberg II | 1:4 | ||||
| 9. Round | 19/10/2016 | FC Augsburg II | - | TSV 1860 München II | 1:0 | ||||
| 19. Round | 12/11/2016 | TSV 1860 München II | - | SpVgg Bayreuth | 1:1 | |
Poland